Loading files from URL
Loading a jcamp from URL
If your NMR spectra are available from a URL it can be loaded directly by using the following syntax
https://www.nmrium.org/nmrium#?jcamp=jcampURLWhere URL is the url that allows to retrieve the jcamp. Because you are appending the URL after #? this information is not submitted to the server and therefore is suitable even with confidential information (a URL containing an access token for example).
Here is an example of a working URL that loads a jcamp directly in NMRium.
https://www.nmrium.org/nmrium#?jcamp=https://cheminfo.github.io/nmr-dataset-demo/ethylbenzene/1h.jdx
Loading an inline JCAMP-DX
In some application it may be easier to directly add the JCAMP-DX in the URL. Please note however that a URL is limited in length depending on the browser. As of September 2022:
- Google Chrome and Edge : 2,097,152 characters
- Mozilla Firefox: unlimited
- Safari: 80,000 characters
Please note however that you need to add a # in order to prevent your browser to send us any information.
Don't forget that the JCAMP-DX has to be url encoded using in javascript encodeURIComponent.
Loading a NMRium file from URL
NMRium files contains all the information related to the spectra to display. This includes the data (or where to find the data), the processing and the assignment.
Here is an example of a working URL that loads a NMRium file format directly in NMRium.
Loading a table of contents
It you would like to have a menu on the left containing many examples you should load a correctly formatted .json file. In this case the URL has the following structure:
Here is an example of the content of the toc json file:
[
{
"file": "./artemisin/1h.json",
"title": "artemisin",
"view": "",
"selected": true
},
{
"file": "./borohydride/1h.json",
"title": "borohydride",
"view": ""
},
{
"file": "./cyclopropanes/1h.json",
"title": "cyclopropane derivatives",
"view": ""
},
{
"file": "./cyclopropnes_wrongPhase/1h.json",
"title": "cyclopropane derivatives with wrong phase",
"view": ""
},
{
"file": "./geraniol/1h.json",
"title": "geraniol",
"view": ""
},
{
"file": "./glucose/1h.json",
"title": "glucose",
"view": ""
}
]
The file attribute will contain the relative link to an NMRium file (encodes as a JSON) that describes the set of jcamp-dx to load. It may also contain chemical structures.
{
"spectra": [
{
"data": {},
"id": "0abwvynpah97",
"source": {
"jcampURL": "./artemisin/1h.jdx"
},
"display": {
"name": "artemisin",
"color": "#C10020"
}
}
],
"molecules": [
{
"molfile": "68827\r\n -OEChem-12311614122D\r\n\r\n 42 45 0 0 0 0 0 0 0 0999 V2000\r\n 4.3177 0.4203 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.7899 1.1100 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\r\n 6.4870 -0.3207 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.5402 1.3953 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\r\n 7.4004 -1.8275 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.6664 -0.2988 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 3.7655 0.1351 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.7603 -1.3362 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.8959 -0.4383 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.5674 0.1351 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 3.9042 -1.9296 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 3.5430 1.1100 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.9657 -1.4776 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.6389 -1.8668 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.1664 1.8919 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.1664 1.8919 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.0000 0.0059 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 6.5237 -1.3465 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.6330 -2.8668 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.3890 2.8668 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.9996 0.5039 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.7870 -2.1858 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.3803 -0.7826 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.8780 -0.6561 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 3.5436 -2.4339 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.3394 -2.3712 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 3.1564 1.5948 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.9844 0.8410 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.3491 -1.4127 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.7963 -2.0740 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 6.1762 -2.1762 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.3044 2.4963 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 3.6078 2.1609 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 2.2755 0.5614 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 1.4446 0.2814 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 1.7246 -0.5495 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.0130 -2.8632 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.6294 -3.4868 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 6.2530 -2.8704 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.9934 2.7288 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 5.5269 3.4712 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 4.7845 3.0048 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\r\n 1 4 1 0 0 0 0\r\n 4 15 1 0 0 0 0\r\n 15 16 1 0 0 0 0\r\n 15 20 1 0 0 0 0\r\n 2 15 1 0 0 0 0\r\n 2 10 1 0 0 0 0\r\n 10 24 1 0 0 0 0\r\n 3 10 1 0 0 0 0\r\n 3 18 1 0 0 0 0\r\n 14 31 1 0 0 0 0\r\n 14 18 1 0 0 0 0\r\n 14 19 1 0 0 0 0\r\n 8 22 1 0 0 0 0\r\n 8 14 1 0 0 0 0\r\n 8 11 1 0 0 0 0\r\n 6 1 1 0 0 0 0\r\n 6 10 1 0 0 0 0\r\n 6 8 1 0 0 0 0\r\n 6 7 1 0 0 0 0\r\n 7 21 1 0 0 0 0\r\n 7 9 1 0 0 0 0\r\n 7 12 1 0 0 0 0\r\n 9 23 1 0 0 0 0\r\n 9 13 1 0 0 0 0\r\n 9 17 1 0 0 0 0\r\n 13 30 1 0 0 0 0\r\n 13 29 1 0 0 0 0\r\n 11 25 1 0 0 0 0\r\n 11 26 1 0 0 0 0\r\n 11 13 1 0 0 0 0\r\n 16 33 1 0 0 0 0\r\n 16 32 1 0 0 0 0\r\n 12 28 1 0 0 0 0\r\n 12 27 1 0 0 0 0\r\n 12 16 1 0 0 0 0\r\n 20 41 1 0 0 0 0\r\n 20 42 1 0 0 0 0\r\n 20 40 1 0 0 0 0\r\n 5 18 2 0 0 0 0\r\n 19 38 1 0 0 0 0\r\n 19 39 1 0 0 0 0\r\n 19 37 1 0 0 0 0\r\n 17 34 1 0 0 0 0\r\n 17 35 1 0 0 0 0\r\n 17 36 1 0 0 0 0\r\nM ZZC 1 20\r\nM ZZC 2 14\r\nM ZZC 3 2\r\nM ZZC 4 19\r\nM ZZC 5 16\r\nM ZZC 6 6\r\nM ZZC 7 10\r\nM ZZC 8 5\r\nM ZZC 9 9\r\nM ZZC 10 1\r\nM ZZC 11 7\r\nM ZZC 12 11\r\nM ZZC 13 8\r\nM ZZC 14 4\r\nM ZZC 15 13\r\nM ZZC 16 12\r\nM ZZC 17 18\r\nM ZZC 18 3\r\nM ZZC 19 17\r\nM ZZC 20 15\r\nM ZZC 21 29\r\nM ZZC 22 23\r\nM ZZC 23 28\r\nM ZZC 24 21\r\nM ZZC 25 25\r\nM ZZC 26 24\r\nM ZZC 27 31\r\nM ZZC 28 30\r\nM ZZC 29 27\r\nM ZZC 30 26\r\nM ZZC 31 22\r\nM ZZC 32 32\r\nM ZZC 33 33\r\nM ZZC 34 40\r\nM ZZC 35 41\r\nM ZZC 36 42\r\nM ZZC 37 37\r\nM ZZC 38 38\r\nM ZZC 39 39\r\nM ZZC 40 34\r\nM ZZC 41 35\r\nM ZZC 42 36\r\nM END\r\n"
}
]
}
Here is a working example https://www.nmrium.org/nmrium#?toc=https%3A%2F%2Fcheminfo.github.io%2Fnmr-dataset3%2Fmultiplet%2Findex.json